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I've written a wrapper function to calculate consensus sequences from POA alignments using rust-bio. Some sets of sequences panic where I wouldn't expect them too; for example, see the following:
`…
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Hi, firstly thank you for creating the nabseq_nf pipeline.
I've been running the nabseq pipeline on Seqera/Tower and noticed that the biggest bottleneck is the `subset_aligned_reads ` step, which f…
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Hi,
I am running ARTIC pipeline v1.2.1, and I found that there may be an issue in case an amplicon coverage is exactly equal to 20. In that case, Nanopolish is not calling the variant (nanopolish var…
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Hi all,
When I run `minion` for a specific sample I get an error that says:
```
Command failed:bcftools consensus -f results/minion/barcode72.preconsensus.fasta results/minion/barcode72.pass.v…
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[NOTE] calling consensus sequence between anchors...
terminate called after throwing an instance of 'std::bad_alloc'
what(): std::bad_alloc
Compute resource seems to be ample from a memory per…
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[P3294R0](https://wg21.link/p3294r0) Code Injection with Token Sequences (Barry Revzin, Andrei Alexandrescu, Daveed Vandevoorde)
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While working on #5287, some tasks were identified to be done but are not critical.
- [ ] Mark stale events out of the `insertedEvents` queue
- [ ] Test coin rounds
- [ ] check if `stronglySeeP` re…
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### Description
Consensus persists two data structure atomically: (i) `last_committed` useful for safe crash-recovery of consensus, and (ii) `sequence` to help subscribers/clients to synchronise with…
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### Description of feature
consensus sequence can maybe created using this: https://samtools.github.io/bcftools/bcftools.html#consensus
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### Implementation ideas
Currently during sync, blocks are processed in First Come, First Served manner. After first block at given height is processed, other at this height are completely ignored.…