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nf-cmgg
/
structural
A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region expansions (RREs) from short DNA reads
https://nf-cmgg.github.io/structural/
MIT License
14
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3
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Bug/sex determination
#97
nvnieuwk
closed
1 month ago
1
smoove makes empty file
#96
mvheetve
opened
1 month ago
1
sex unknown (ratio in gray area)
#95
mvheetve
opened
1 month ago
0
Release PR 0.2.0
#94
nvnieuwk
closed
1 month ago
0
Update/fix annotsv + add HPO terms
#93
nvnieuwk
closed
2 months ago
1
Automatically check if the VEP cache contains a merged cache
#92
nvnieuwk
opened
3 months ago
0
Make the workflow pluggable
#91
nvnieuwk
closed
3 months ago
1
Make the workflow pluggable
#90
nvnieuwk
closed
3 months ago
1
Fix smoove output when using `--output_callers`
#89
nvnieuwk
closed
4 months ago
0
Some bugs found the output of the pipeline
#88
nvnieuwk
opened
4 months ago
1
bump wisecondorx to v1.2.6
#87
nvnieuwk
closed
4 months ago
0
smoove.vcf.gz indexin
#86
mvheetve
closed
4 months ago
1
Add keyword shortcuts to the `--callers` parameter
#85
nvnieuwk
closed
4 months ago
0
--callers all param
#84
mvheetve
closed
4 months ago
3
Copy samplesheet in output directory
#83
nvnieuwk
opened
4 months ago
0
Add HPO terms to the samplesheet
#82
nvnieuwk
closed
2 months ago
1
Only save the last dev docs
#81
nvnieuwk
closed
5 months ago
1
v0.1.0 pipeline release
#80
nvnieuwk
closed
5 months ago
2
docs part 2
#79
mvheetve
closed
5 months ago
0
MSG: ERROR: Cache directory vep/homo_sapiens not found
#78
mvheetve
closed
5 months ago
5
Last fixes before v0.1.0 release
#77
nvnieuwk
closed
5 months ago
0
docs-output
#76
mvheetve
closed
5 months ago
1
Docs 0.1.0dev
#75
nvnieuwk
closed
5 months ago
0
Create beautiful docs with mkdocs
#74
nvnieuwk
closed
5 months ago
0
Template v2.13.1 sync + update all modules
#73
nvnieuwk
closed
5 months ago
1
Add Svync standardization + other fixes
#72
nvnieuwk
closed
5 months ago
1
Vcfanno annotate gene panel overlaps
#71
nvnieuwk
opened
6 months ago
0
Fully support conda for all modules
#70
nvnieuwk
opened
7 months ago
0
Fix annotsv TCL error
#69
nvnieuwk
closed
6 months ago
2
AnnotSV issue
#68
mvheetve
closed
6 months ago
2
Handling duplicate rows in samplesheet with warnings
#67
mvheetve
closed
9 months ago
1
include gnomADv4 SV annotation
#66
mvheetve
opened
9 months ago
0
Investigate VDS format for the creation of a false positive variants list
#65
nvnieuwk
opened
9 months ago
0
Add proper testing + fix some issues found
#64
nvnieuwk
closed
7 months ago
1
Better header handling
#63
nvnieuwk
closed
5 months ago
0
Update tests
#62
nvnieuwk
closed
5 months ago
0
Family merging
#61
nvnieuwk
closed
9 months ago
1
Add VCF to JSON conversion
#60
nvnieuwk
opened
9 months ago
4
Standardize variants for callers of the same type
#59
nvnieuwk
closed
5 months ago
13
CNV VCFs
#58
nvnieuwk
closed
9 months ago
1
Add family support
#57
nvnieuwk
closed
9 months ago
1
Add BED => VCF support for CNVs
#56
nvnieuwk
closed
9 months ago
1
Add filtering on annotations + fix linting
#55
nvnieuwk
closed
9 months ago
2
Add comprehensive filter steps
#54
nvnieuwk
closed
9 months ago
2
Investigate stranger for repeat expansion annotation
#53
nvnieuwk
opened
10 months ago
0
Fix vep container issue
#52
nvnieuwk
closed
9 months ago
2
Add validation
#51
nvnieuwk
opened
11 months ago
1
Cnv support
#50
nvnieuwk
closed
10 months ago
3
Add VCF to BEDPE conversion
#49
nvnieuwk
opened
11 months ago
1
New caller: svaba
#48
nvnieuwk
opened
1 year ago
0
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