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I am trying to run the following command with the standard values but just changing the threshold of the run. It has difficulties at many stages in the program mostly I think related to needing furthe…
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In this repository, we are developing training material for bioscience researchers who are interested in managing and supervising computational projects. We are creating a first draft in February-Marc…
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- [x] Adding a label indicating the execution order to the tutorial notebooks (for example, 1_tutorial_preprocessing, 2_distribution_to_distribution...)
- [x] Instead of hardcoding paths in the jup…
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Thanks for your great work!! And I have two question about cryoDRGN2.
1. Will training schedule of cryoDRGN2 lead to a long training time?
2. In your cryoDRGN2 paper, you mention that gradient desce…
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Hello there!
I was trying Model Angelo's refine module with my .mrc and pdb file. I am getting error:
File "/home/******/.conda/envs/model_angelo/lib/python3.10/site-packages/model_angelo-1.0.1-py…
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use pytest to perform unit tests.
- [x] preprocess
- [x] SVD
- [x] map to map
- [x] distribution to distribution
- [ ] testing notebooks (low priority). See [here](https://github.com/compSPI/ioS…
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I'm trying to generate a model using a map generated in cryosparc and protein fasta file. The process runs through the Initial C-alpha prediction phase and then terminates, leaving behind an empty out…
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My particle stack is too large for the scratch disk, so only part of it can be transfered. But during the run, relion_refine_mpi does not find the particles correctly during the initial estimation of …
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Maybe this is not cryodrgn specific issue, but more general vae problem???.
Anyway, have you ever seen "nan" like below?
Thank you
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```
2020-08-15 07:13:21 # =====> Epoch: 2457 Averag…
kimdn updated
3 years ago
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### Describe what you would like changed, and why.
I would like to buff differential generator. To make it work from now you have to input 1 pyrotite and 2.0 cyrofluid liquid input per second aft…