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**Submitting author:** @wsmets (Wenke Smets)
**Repository:** https://github.com/LebeerLab/tidytacos
**Branch with paper.md** (empty if default branch): master
**Version:** v0.3.0
**Editor:** @diazrena…
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**Describe the problem concisely**.
Quantifying changes in cell type abundance between datasets
https://www.biorxiv.org/content/10.1101/532846v4
https://www.biorxiv.org/content/10.1101/2020.11.23…
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Hi,
It seems that CAMERA doesn't really like the NAs left by fillChromPeaks:
```
Error in .local(object, ...) : NA values in xcmsSet. Use fillPeaks()
Calls: annotatediff -> diffreport -> diffr…
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Hi, I’ve got a couple of technical and conceptual questions about using kallisto with the TCC option. For context, I’ve recently read the Commons Cell Atlas paper (https://www.biorxiv.org/content/10.1…
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In this issue you can either:
- **Add papers** that you think are interesting to read and discuss (please stick to the format).
- **vote**: should be done using :+1: on comments
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## Short description of the problem
I end up with different results per sample when I run co-assembly on all my samples at once vs going through the anvio pipeline for subsets of my files.
## an…
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it is really a great package that I am enjoying. Thanks for all of tutorials.
I ran different differential abundance analyses and tried to compare those different methods.
Any possibility to inclu…
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**Original article:** [Huisman, J., & Weissing, F. J. (1999). Biodiversity of plankton by species oscillations and chaos. Nature, 402(6760), 407-410.](https://www.nature.com/articles/46540)
**PDF U…
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Hi Titus,
I am using lca gather to quantify the abundance of a set number of reference genomes I have in a panel of metagenomic datasets (fastq reads). I am then extracting the "f_unique_weighted" …
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Hi,
I have made this examples https://microbiome.github.io/OMA/differential-abundance.html#tree-based-methods a long ago, which was supposed to use phylogeny tree information at the method. However…