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Hi, the software seems very good, but I am new in metagenome analysis and I have questions about the selection of appropriate reference genomes (indexes) when using 'hostile'.
1.
I read the "Refe…
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Hi Shujun,
I'm trying to wrap up some work on the Hesperis matronalis genome and am having a problem with panEDTA - it keeps timing out. I've cranked up the RAM to a terabyte and it still just runs…
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It would be useful to have complete genomes in the repository for Selenobot purposes (necessary for extending predicted selenoproteins).
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Hello
I wanted to try out RawHash on some human genome data. I am still at the first step on generating the index.
For R9.4 I could create the index using the following command without any issue.
…
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In the future, I want to map the resequencing data of different species of onto my map genome.Then the group vcf with good classification is used to carry out the process of vgmpmap
I wonder if this …
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I wanted to use DIMPL to analyze the genome of Xylella fastidiosa for ncRNA, but the genome that is deposited doesnt seem to work.
Here is a copy of the code in the first Jupyter notebook and the err…
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Hello Genrich developers,
First off, thank you for creating a great tool. It's been easy to use so far. I was wondering if there is anyway to input a custom chromosome size file for hg19? For insta…
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Hi, I have two huge genomes (ref: 48G; query: 20G).
To obtain an accurate genome alignment, I tried to annotate the transposable element (TE) and filter the non-TE sequence longer than 50bp to be the…
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Just wanted to know if there was a way to specify the hg38 reference genome for the `CNV.create_anno` step, I couldn't find any arguments that allow this but I could have missed something. Thank you!
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Hi,
I installed genome_uploader using the below two commands:
```
conda env create -f requirements.yml
conda activate genome_uploader
```
When trying to run `python genome_upload.py ...` , …