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It would be really good to have an optional type_id added to all linker tables in chado consistently. That way we could indicate what type of link is being made and remove a lot of ambiguity that it c…
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Hello,
I run bamquery
```python
!python xxx/Software/bamquery/BamQuery/BamQuery.py xxx/Software/bamquery/BamQuery try_1 v38_104 --mode normal --t 8 --plots
```
And my output is as follows,
`…
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Hi, I assembled the genome of allotetraploid species using hifiasm with size of ~3.7gb. I used the PacBio HiFi reads in Merqury for kmer analysis of genome estimation of our allotetraploid species. I …
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Dear all,
I am trying to assemble several varieties of the same specie but all the assemblies obtained have the same genome size in all varieties. All assemblies show a different nucleotide seque…
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I was just wondering if anyone knew which GTF file I should be using for my AS analysis.
I'm using mapped BAM files that I've aligned to a Glycine max reference genome.
However, If I'm doing alterna…
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Found with @aviczhl2 's phylogenic tree analysis tool.
JN.1.29.1> C8917T> G22599C(S:R346T)> G18318T, C20930T(Orf1b:T2488M)> del686-694(Orf1a:del141-143)> A259G, A28984G> T21728G(S:L56V)> T11635C, T…
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Hello,
Thanks very much for producing this tool. It’s fantastic to have a method to check for genetic correlations across phenotypes. I have a few questions, but first a few details about my analys…
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Hi there,
I'm trying to install bcbio mm10 genome data for RNAseq and ATACseq analysis, but I noticed that several previous issues mentioned there might be some errors when downloading the mirbase. S…
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Hi,
We've been trying to simulate Zymo mock communities using your "even" pre-trained model. We've consistently found *Staphylococcus aureus* to be seemingly undersimulated, while *Cryptococcus neo…