-
Hi,
I'm wondering how I can make a `--quilt_hla_supplementary_info_file` for hg19. I guess I can liftOver the file provided in the Github repo, but I hope to add more genes, like `c('A','B','C','DPA1…
-
Hi,
After getting the neoepitopes, I thought of a way to prioritize by using the availability of the allele and the binding score of the peptide with that allele as a factor. As you mentioned, you …
-
**Is your feature request related to a problem? Please describe.**
We need to create a minimal cancer variant calling pipeline use case setup here
- https://github.com/bihealth/snappy-use-case-can…
-
Because my bamfile were generated from HISAT2, I tried to convert them first using get-reads-alt-unmap.sh
./get-reads-alt-unmap.sh inbam outbam
Then there are a lot of warnings and finally an erro…
-
hi,
when i use the -a option it only types A,B,C,DQA1,DRB1. if i specify -a MICA for instance, i get the message "Input bam : A DOES NOT exist. Please check the bam exists." I know the MICA reads are…
-
I really liked that you put all related work in links in the related work folder. It is nice to see where to check for more information.
1. In homepage the input and output paragraph are merged toget…
-
I get an error when trying to run your test.bam (tests/test.bam) on Docker…
-
I'm currently trying to run `hisat_genotype` in a `docker` container due to #66
Below is my `Dockerfile`
```
FROM biocontainers/biocontainers:vdebian-buster-backports_cv1
USER root
ENV DE…
-
columns_to_GLstring, for example, uses HLA_truncate to replace any nonstandard HLA typing with NAs, but my updated HLA_truncate does not have this feature. Write a new function to validate HLA typing …
-
Hello, I am a CWL rookie. I want to use the Immuno.cwl to detect neoantigens. It makes me confused that (https://github.com/genome/analysis-workflows) contains too many CWL processes. Is there a descr…