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Hi, I am new to the microbiome analysis and I have been trying to filter my microbiome data after decontam but have encountered some errors. I am in the part where I would like to remove taxa with a …
aff30 updated
2 years ago
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Hi team
This is a powerful package and your up-to-date tutorial is very helpful.
I was wondering if you could help with the downstream analysis for functional diversity? https://github.com/gavinm…
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Hi, an error occurred when running cross-trait LDSC:
Error in h(simpleError(msg, call)) :
error in evaluating the argument 'x' in selecting a method for function 't': non-conformable arguments
…
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Turnbaugh, P. J.
Ridaura, V. K.
Faith, J. J.
Rey, F. E.
Knight, R.
Gordon, J. I.
2009.
The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice
http://dx.d…
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Hi,
PIME has been an amazing addition to the microbiome analysis tools I use, thank you for putting it together. I tried using PIME with a phyloseq object that has a tree attached and it doesn't all…
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# Title
Exploring and solving functional analysis gaps in metaproteomics.
# Abstract
Metaproteomics, the study of the full protein complement of microbial communities, is becoming an increasi…
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**Improvement Description**
Just wondering if there are plan to implement the two methods below. They can also be used for longitudinal microbiome analysis with a given distance matrix.
**Referen…
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https://www.nature.com/nbt/journal/v35/n5/full/nbt.3790.html - Discovering and linking public omics data sets using the Omics Discovery Index
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Dear Yu,
Thanks for the development of this wonderful package, which can help me a lot with the microbiome data analysis. It came an error showed that "Error in get_call(obj, "classgroup") : 缺…
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Dear Developer,
Firstly, thank you for this fantastic R package. I am working with low microbial biomass samples from the nasopharynx. We are using whole metagenomic sequencing data to characterize…