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In https://github.com/microbiomedata/nmdc-field-notes/issues/184, it was pointed out that there are a number of values listed as `examples` for some slots which do not conform to the validation rules …
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Justification: In order to migrate runtime to the cloud for increased stability we need to transition code that interacts with mongo directly to API queries.
blocked by:
https://github.com/microbi…
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IIRC `https://bioregistry.io/nmdc:$1` resolves to `https://drs.microbiomedata.org/objects/$1`.
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**Deliverable this task is associated with**
_See Deliverables tab here: _
- 4.9 | Perform user research to refine public API capabilities
**RACI**
_Tag people in their roles_
- Responsib…
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remove some of these scripts?
```toml
oak-tree-to-pv-list = "nmdc_submission_schema.scripts.oak_tree_to_pv_list:main"
dh-json2linkml = 'nmdc_submission_schema.scripts.dh_json2linkml:update_json'…
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The `|`s are getting escaped or even double escaped
see https://github.com/microbiomedata/submission-schema/blob/issue-18-water-patterns/examples/output/SampleData-water-data.regen.yaml
would ne…
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The `data_object` [model](https://github.com/microbiomedata/nmdc-server/blob/fd8ff76e7f5d4cf58a076f498294f6f27451ec48/nmdc_server/models.py#L415-L437)'s `workflow_type` is a nullable string column.
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@pkalita-lbl I created this repo to do some experimentation related to
- https://github.com/microbiomedata/sheets_and_friends/issues/116
- maybe https://github.com/microbiomedata/sheets_and_friend…
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Related to #239, because none of the existing tests validate against the schema when nmdc-schema changed we realize that nmdc_automation/import_automation/activity_mapper.py should also be updated.
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aclum updated
1 month ago
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Issue created from host: https://data.microbiomedata.org/
Submitter: Jihoon Yang, 0000-0002-7018-121X
Submission ID: 9b97e5d1-9cd8-4981-b947-b7bcf49c4893
Has data been generated: Yes
PI name: …