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I de-convoluted 12 bulk RNA seq samples of brains from mice subjected to stroke. Each brain was separated into two hemispheres (Ipsilateral where ischemia took place and we expect neuronal death and …
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Hi,@smorabit, thank you for your answer to a small bug in my hdWGCNA last time. I have encountered a question that I would like to ask you. For example, the single-cell data I studied for stroke cons…
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Hi,
Thanks for this good tool, I sucessfully installed infercnv, while I test the example data, error ocurred:
> library(infercnv)
The legacy packages maptools, rgdal, and rgeos, underpinning the s…
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Hi,
I am not able to run this code as I am having an error and I am not able to understand this
```python
import pyranges as pr
from pycistarget.utils import region_names_to_coordinates
regio…
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Study folder: [syn3219045](https://www.synapse.org/#!Synapse:syn3219045)
We can expand these checks to be more specific, or mark them off/remove them if they are not relevant.
**Folder Structur…
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stereo.core.StPipeline.find_marker_genes: The set control group cannot be identified in the multi-sample, and when the program is running, it will only compare the difference between the case group an…
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MSID: 100446
Version: 1
Preprint DOI: https://doi.org/10.1101/2024.06.13.598890
## Step 1. Awaiting reviews
**Editorial to post reviews via hypothesis**
**Useful links:**
- DocMap: https://data-h…
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Thank you for developing a great pipeline. Can it be applied to brightfield DAB-stained images?
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Hi ,
Thanks a lot for this useful tool !
I'm running Liana and i'm curious that you cannot provide methods to generate Chord diagram or heatmap as in the liana R wrapper.
Have you planned to…
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Thanks for the tool, I am truly impressed by the remarkable findings presented in your work.
I have been working on implementing your simulation for MPOA. However, when attempting to compare the d…
xieaq updated
9 months ago