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### Context
We now have a [centralized reusable GitHub Action workflow for running pathogen builds](https://github.com/nextstrain/.github/blob/261c64f084a721aa5779bc796c38e07d12f31e81/.github/workflo…
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### Context
Strain names for pathogens can be messy depending on the pathogen and data source.
We would like to provide a way to format strain names using general pattern matching.
See #860 for…
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## What were you trying to do and how can we improve it?
Shutting down the federal government shutdown to slow the spread of the virus and stopping the virus spread of COVID/Monkeypox and Omicron Va…
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### Context
Current pathogen-repo-ci seems to assume that we don't need to customize workdir in nextstrain build ., i.e. we can't set nextstrain build foobar.
Our nextstrain/pathogen-repo-template…
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### Current Behavior
Augur refine throws `ERROR: 'NoneType' object has no attribute 'shape'` when running the monkeypox build
### Expected behavior
A more useful error is thrown if there's a data…
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### DO NOT REMOVE OR SKIP THE ISSUE TEMPLATE
- [X] I understand that I will be **blocked** if I remove or skip any mandatory\* field
### Checklist
- [X] I'm reporting a new site support reque…
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Ex) 텐서팀 / 20185124 / 나영훈 / MySQL, Python, OpenAP를 활용한 비트코인 자동투자 시뮬레이터
링크 : https://github.com/younghoonNa/TradingBot
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Hello,
I have discovered a bug with the vf-tabs component.
In the Pathogen portal we have this page:
And if the 'ENA result' link is clicked, it doesn't preserve the 'monkeypox' path, as you ca…
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see https://be-ehealth-standards.atlassian.net/jira/servicedesk/projects/ESI/queues/custom/19/ESI-103
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Today, I observed the conda-base equivalent of https://github.com/nextstrain/docker-base/issues/128. In the [build for 20230731T202813Z](https://github.com/nextstrain/conda-base/actions/runs/571932868…