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Hi.
I have three multi-omics datasets of RNA seq (vst normalization), DNA methylation (beta value) and plasma metabolomics.
I normalized my metabolite data with the total sum of all detected ions a…
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Dear author,
I am a newbie in the field of bioinfo, Thank you for your research.I am trying to replicate your experiment for a class project so I appreciate you helping me with this.
so I don't hav…
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This ticket outlines what I have in mind for now to get us started. I might continue to edit this post as I can think of more to add or reorganize. So please check back on this from time to time.
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**Background**:
Though many omics data repositories host large volumes of datasets from diverse studies, cross-study analysis within these repositories is still somewhat limited due to the heterogen…
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When data one alteration type are missing from the TCGA, the package returns a generic message:
> "No alteration to display for the selected tumor types and alteration types"
It would be more us…
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my command:
`demuxlet --sam ~/Project_kunlun/02_CellRanger/HUVEC_Omics/outs/gex_possorted_bam.bam --group-list ~/Project_kunlun/02_CellRanger/HUVEC_Omics/outs/filtered_feature_bc_matrix/barcodes.tsv.…
Moxsf updated
6 months ago
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the goal is to provide a lightweight alignment between qiime and the NMDC schema. This could be encoded either in mappings in the schema, or simply in comments
Some initial rough notes:
https://…
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Community Engagement, Outreach & Sustainable Partnerships
During the Pilot, we have seen a steady growth in our online community engagement, as indicated by
metrics on our social media account, the Da…
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Hello,
Do you think TRUST4 can work with whole exome sequence (WES) data? Perhaps, it could provide more information if it runs for both normal blood and normal samples. If not, do you know any ot…
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For using ISS data one needs to know the "round" and "channel" for each image.
Is it within scope to represent this metadata in SpatialData?
I could not see anything about this here: https://git…