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WHO has issued a update of the “Catalogue of mutations in Mycobacterium tuberculosis complex and their association with drug resistance”. Will the tbdb be updated accordingly? Thank you so much.
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Hello,
I came across an error with the Pathogen Profiler [combine_vcf_variants.py](https://github.com/jodyphelan/pathogen-profiler/blob/master/scripts/combine_vcf_variants.py) script that seems to …
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GH Action not updating website :(
Gh-pages peaceiris action is the bit failing:
```
[INFO] ForceOrphan: false
/usr/bin/git clone --depth=1 --single-branch --branch gh-pages ***github.com/Nat…
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Hello!
Is the tool able to detect PCR duplicates or should we remove them previously?
Thanks in advance.
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Greetings,
I am writing because I am using multiple SV calling tools to detect both consensus and heterogeneity in structural variants in Mycobacterium tuberculosis. Is there a setting or a flag all…
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New term request Mycobacterium tuberculosis in CSF PCR positive (samant_101122005636): Cerebrospinal fluid; polymerase chain reaction; DNA
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New term request Mycobacterium tuberculosis in CSF PCR positive (samant_101122005636): Cerebrospinal fluid; polymerase chain reaction; DNA
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Hi Didelot,
I am using the infer_multittree function in the TransPhylo package in R to infer transmission in a group of Mycobacterium tuberculosis clusters from a specific region. However, I am not…
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The LOINC code `48176-2|Deprecated Mycobacterium tuberculosis rifAMPin resistance (rpoB) gene [Presence] in Unspecified specimen by NAA with probe detection` is deprecated: https://loinc.org/48176-2/
…
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Please provide as much information as you can:
* **Suggested term label:**
mycofactocin-coupled metabolic process
* **Definition (free text)**
The chemical reactions and pathways performed by…