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```
Eric posted this message to the list. You need to read the attached pdf
containing images for it to make sense
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2) Our next challenge was how to encode the TPP probab…
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I am wondering on how to analyze the mzid output from the MS-GF+ for protein quantifications. Which software of tools can be used to quantify proteins identified by this pipeline? I am stuck and I am …
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We can either look at [this list](https://github.com/Workflomics/containers/blob/main/tool_annotations.md), but we should discuss a set of tools that are not difficult to implement but would allow mor…
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- [x] Number of Peptides identified: Total number of peptide Sequences identified.
- [x] Number of PeptidoForms: Number of Peptides + modifications + position of the modification.
- [x] Number of …
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Hi,
I am trying to import a cross-link search from Mascot into xiVIEW and convert the data to an ssl file to create a library for searching files in Skyline. If I only import the xiVIW-csv into xiV…
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modification defintion could be uploaded as a separate file.
This could be in the forma of the used xi-config or in form of the json-format as used by the knownmodification request from xiannotator.
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To represent a de novo peptide, we can set 0 PeptideEvidence in SpectrumIdentificationItem.
As I understand, SpectrumIdentificationItem is embedded in SpectrumIdentificationList and referred by Sp…
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I annotated some peaks. After saving the layer and re-opening the file the annotations disappeared. Can anyone help?
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Ville Koskinen is working on mzIdentML 1.2 export from Mascot and reports this issue:
we're looking at what changes are needed to export mzIdentML 1.2 from Mascot Server. One problem we've encounte…
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A suggestion to add the ability to generate mzIdentML reports through the FragPipe interface.
Issue with Philosopher:
Unsuccessful in using Philosopher with the pipeline mode to generate mzID file…