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Hi @arangrhie
Thank you and the team for great QC tool. I have two questions:
1) I have parental data from HiFi and MGI platform. I used HiFi parental data and MGI for assessment. HiFi based phasin…
LGG02 updated
4 months ago
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We recently used two batches of data cell1 and cell2 to assemble maize genome. The commands are:
hifiasm -o XXX1 -t 20 cell1.fasta.gz cell2.fasta.gz
hifiasm -o XXX2 -t 20 cell2.fasta.gz cell1.fasta.…
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Hi,
Thank you for sharing this tool with the community. After reading the manual and issues, I would like to use phasebook for my genome projects.
FYI,
Input data: PacBio (Sequel) with ~200X co…
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I'm opening a separate thread for an issue, as suggested by @adamnovak here: https://github.com/ComparativeGenomicsToolkit/cactus/issues/63#issuecomment-475440310.
I've been testing Cactus using th…
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Hi there,
I am getting a raw haplome size of 595MB (bellow) which is very close to the genome size but the final assembly (ref.fa) is around 830MB. Any ideas of what can be happening?
thanks in …
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Input of definitions and list of values can be found:
https://github.com/pha4ge/Wastewater_Contextual_Data_Specification/tree/main/Template
The following table combines the info from above and add…
edsu7 updated
2 months ago
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"""
3. In the comparsion, all metrics must be carefully described, as well as the sizes of assemblies, numbers of contigs, N50, etc.
"""
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Hi, may I ask a question: merqury provides phased block N50, it seems it does not provide phased block NG50, is it right or I missed something? Thanks in advance.
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Hi Zhou,
I'm currently working with Yahs and ONT PoreC data to scaffold my plant genome (~800 Mb). I've tried two different protocols (3 libraries each with concatenated .bed files) for PoreC ana…
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### 🐛 Describe the bug
We are planning upgrading our python environment from 3.8 to 3.10, because pytorch has deprecated python 3.8 recently.
But we found that there are performance gaps between pyt…