-
You have:
```
# if you do not habe BLAST+ installed run:
$ sudo apt-get install ncbi-blast+
# go to the place where Uniref fasta file is being stored (change the path bellow accordingly):
$ cd…
-
Hello
Is it possible to add a way to use all needed options for the blast tools ?
Of course all options can't be fully integrated, the interface will become too complex.
So I have add a simple "tex…
-
https://github.com/biocore/sortmerna/blob/4405830700ca14485aa2d4081d69cac87c429dbd/include/options.hpp#L147
In `sortmerna` help message, blast output is indicated as `(Blast - m 8 format)`. This co…
-
I run classify_bins using MetaWRAP v=1.3.2, blast+ 2.13.0, and the error as follows:
The file /systemRoot/db/NCBI_nt/nt.00.nhd doesnt exist, which likely means that you havent set the correct path…
-
```
Failure: test: crb-blast should get number of reciprocals. (TestCRBBlast)
/build/ruby-crb-blast-0.6.6/test/test_test.rb:82:in `block (2 levels) in '
expected but was
diff:
? 11
? 0
```
ruby-c…
-
hello,
first of all many thanks for the work and effort to pile this workflow.
I am attending to use the pipeline however I fail to find where I can indicate where my already downloaded nt datab…
-
I found myself really wanting to blast against a feature group. I actually still go to NCBI to do these small time blasts.
 and increased --minimum-…
-
BLAST often fails, and also using too many BLAST resources can get you banned from using BLAST. Right now the pipeline fails (in query mode) if it receives no BLAST input. It would be helpful to be a…