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I've not seen this issue on your repository. Do you know why this would come about?
```
Building DAG of jobs...
Using shell: /usr/bin/bash
Provided cores: 1 (use --cores to define parallelism)
Ru…
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I'm having similar problems to an issue from 2017 (duplicate isoforms in chain_samples.py output), where I'm seeing duplicate isoforms in the output of chain_samples.py, however the isoforms are all m…
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Hi ,
I would like to quantify the TE expression from pacbio iso-seq . I directly using minimap2 bam file to run TElocal using `--mode uniq`, but the ouput file all zero count. I would like to know it…
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Hi,
When I tried to run [PolyAtailor](https://github.com/BMILAB/PolyAtailor), PolyAtailor_on_mouse_PACBIO_data.Rmd file, I met the following problem:
p
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Hi, when I download vntr_data_recommended_loci.zip , there are two files ( illumina and pacbio ). If I have Nanopore data, can I choose the pacbio file or do you have a specific nanopore file that I c…
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Dear,
I succeeded a very similar first run with docker (ONT assembly all the rest the same). The ONT run ended after few hours and gave results.
The second run hangs on some prothint record (Pac…
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Dear developer
Thank you for developing such innovative software, I would like to know if this software can be adapted to PacBio CLR, PacBio Hifi and Nanopore data？
Thinks
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Hi Alexander,
I want to map gencode.v43.transcripts.fa to GRCh38.primary_assembly.genome.fa, but I failed with STAR and STARlong, and the generated Aligned.out.bam is particularly small, I don't unde…
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Hi all
We have a genome size about 600 Mb with high heterozygosity about 3%,and we have 42 Gb,N50 11 Kb pacbio data.
I got this genome size 1.36 Gb,N50 60 Kb a very bad result with falcon,b…
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Hi,
@pb-jlandolin
I download some test data from the ncbi, as the sra-tools do not provide a "pacbio-dump" like fastq-dump or illumina-dump, I used the commod "fastq-dump --table SEQUENCE *.sra" . But…