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sgibb updated
7 years ago
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I have done some edits.
In addition, here are some comments:
1. Explain why counting during aggregation, if there's any reason.
2. Wouldn't a function to create the peptide identification matrix …
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Create a page for (single) Protein Analysis (note since we now refer to the "single peptide analysis" page as "Tryptic Peptide Analysis", I would suggest to refer to the "single protein analysis" page…
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Hi,
All the identified peptides with their values are mentioned in result table - identification/peak areas.
Could you tell about the reasoning behind their order ?
It might help immensely to h…
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Hi All,
I'm working on this project where I add light and heavy-labeled peptides together, mix them and run on an Orbitrap, using LC-DIA.
Interestingly, when I create my own peptide library usi…
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This is mostly to make the terms more generic by decoupling MS methods from any specific molecule type and by decoupling mudpit from any specific chromatography and/or any specific MS/MS technology. P…
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Hi,
Is DeepScore compatible with FragPipe as input. Can you also enhance the identification of tryptic peptides using DeepScore. How would this behave for very large datasets.
Best, Peer
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Hey Michael,
For a current project we are working on, we are trying to use Sage with HLA peptides, specifically from the [thunderPASEF method](https://www.nature.com/articles/s41467-024-46380-y). W…
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Hello,
We use iRT peptides in almost all our sample preps as a quality control for both our chromatography and identifications.
It would be interesting for us to be able to include a couple of p…
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**Describe the bug**
Hello everyone, currently i am trying to index large peptide fasta files (~50 GB) for peptide searches. This fasta contains 85748938 entries of short peptides (all of them are un…