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Does Smudgeplot recognize haploid or assume polyploidy a priori?
I did some tests with Saccharomyces genomes described in the literature as haploid and I always get the diploid classification from …
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Hi!
First of all, thanks for your work with smudgeplot. Great idea!
I wanted to try smudgeplot on some WGS data of murine cancer cells, and thought I'd start with a normal control sample taken f…
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Dear tangerzhang
Thanks for your tools about assembly of polyploid.
Recently I am doing assembly of a autotetraploid genome, and I follow the workflow #15. After running 3D-DNA, I run the scrip…
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While developing the extension for bees, we wanted to change the genotype at a specific locus, but to a particular heterozygous state. For this, we have written our own function, but it would be much …
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So, I've started thinking about SLiM 4.0. The big thing will be moving forward with the "multispecies SLiM" design that I've been pondering for a while now. However, moving to a new major release (4…
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The terms under chromosomal anomaly (MONDO:0019040) are organized inconsistently.
For example: 'complete trisomy' (duplication of an entire chromosome) and 'partial trisomy' (duplication of part of …
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Good Morning,
Our lab used TGS-GapCloser on a genome we are working on after the failure of a previous program, Dentist, to effectively close existing gaps. In looking at the alignment of our input…
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Hi, @nadegeguiglielmoni
We are working on a autoploypoidy genome, since the `GraphUnzip` have no assumption on the ploidy. We try to use the ONT and HiFi assembly. We choose 57.9Gb >50kb (20x) ONT…
baozg updated
2 years ago
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Hi Kamil,
I would like to ask for your advice with a fairly problematic genome. I used Genomescope to estimate the genome length of the Adriatic sturgeon (Acipenser naccarii, 2n=239 +/- 7 chromosomes…