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So, I've started thinking about SLiM 4.0. The big thing will be moving forward with the "multispecies SLiM" design that I've been pondering for a while now. However, moving to a new major release (4…
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Hi!
First of all, thanks for your work with smudgeplot. Great idea!
I wanted to try smudgeplot on some WGS data of murine cancer cells, and thought I'd start with a normal control sample taken f…
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Good Morning,
Our lab used TGS-GapCloser on a genome we are working on after the failure of a previous program, Dentist, to effectively close existing gaps. In looking at the alignment of our input…
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The terms under chromosomal anomaly (MONDO:0019040) are organized inconsistently.
For example: 'complete trisomy' (duplication of an entire chromosome) and 'partial trisomy' (duplication of part of …
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Hi, @nadegeguiglielmoni
We are working on a autoploypoidy genome, since the `GraphUnzip` have no assumption on the ploidy. We try to use the ONT and HiFi assembly. We choose 57.9Gb >50kb (20x) ONT…
baozg updated
2 years ago
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### 路由地址
/oup/journals
### 完整路由地址
/oup/journals/:name
### 相关文档
https://docs.rsshub.app/journal.html#oxford-university-press
### 预期是什么?
can work
### 实际发生了什么?
I input `/oup/jo…
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Hi,
I see a '--ploidy' parameter in Chorus2. I have a question, if I set this parameter in polyploidy, can we get more probes than the default parameter?
Thanks a lot.
Jiaxin Yu.
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Hi,
Can `verkko` output the `noseq.gfa` for looking at the graph with bandage? For large genome, the sequence info cannot load into bandage easily.
baozg updated
2 years ago
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I have troubles understanding my smudgeplots for two individuals of the same species.
I have used v0.2.3 and the following command to generate the plots:
```
I first extracted genomic kmers usin…
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Hi Kamil,
I would like to ask for your advice with a fairly problematic genome. I used Genomescope to estimate the genome length of the Adriatic sturgeon (Acipenser naccarii, 2n=239 +/- 7 chromosomes…