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**Hello, i am trying to simulate the galaxy protegenomics database search using searchGUI and peptideshaker but when i try to run peptide shaker it gives me the following error:**
Tue May 23 13:51:…
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Dear FragPipe team,
I am working with a phenotype-specific proteogenomic database created using a customized Galaxy pipeline for fetching SRA RNAseq data, genome mapping, variant calling, and datab…
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### Description of the bug
Error:
```
-- done [took 09:53 m (CPU), 09:55 m (Wall)] --
Size of consensus fraction: 260519
Error: Unexpected internal error (Search settings are not matchin…
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### Description of feature
In proteogenomics studies we are probably interested only in peptides that have been identified by `multiple` search engines (more than one search engine). Do we have a wa…
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New projects (12):
1. [A Single-Cell Characterization of Human Post-implantation Embryos Cultured In Vitro Delineates Morphogenesis in Primary Syncytialization](https://data.humancellatlas.org/explore…
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Dear all,
in order to use the very same peaklist files for different search engines, I had to convert some of my files to mzXML before searching them. When I use these files with MSFragger 3.5 I ge…
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I have tried to search peptides in this pmultiqc report http://ftp.pride.ebi.ac.uk/pride/data/proteomes/proteogenomics/benchmakrs/PXD000279/pmultiqc/multiqc_report.html and is not working.
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the line git clone https://
.com/sheynkman-lab/Long-Read-Proteogenomics
cd Long-Read-Proteogenomics seems to be incomplete.
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# `dev`
## Affected projects in catalog `dcp2`
- `df88f39f-01a8-4b5b-92f4-3177d6c0f242`
- `d2111fac-3fc4-4f42-9b6d-32cd6a828267`
- `d3ac7c1b-5302-4804-b611-dad9f89c049d`
- `51f02950-ee25-4f4b…
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**Check for duplicate Projects in Ingest:**
EBI Wranglers need to check that the Projects they've wrangled or are in the process of wrangling don't have any duplicates in Ingest.
They will:
- [x] C…