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Hello,
After running your software, I noticed that some beads were classified as originating from the same cell. Could you please explain how this determination is made? Specifically, I'm curious a…
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Hi,
I am interested in using long and short reads to assemble a transcriptome with RNA-Bloom2.
I had a few questions regarding pre-processing of reads before using RNA-Bloom2.
I am loosely fo…
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Project Title: Systematic comparative analysis of single cell RNA-sequencing methodsProject UUID: 88ec040b-8705-4f77-8f41-f81e57632f7dWrangler/s: Chris,,Villarreal; William,G,Sullivan; Parisa,,Nejad; …
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Hi,
Could you provide the code on how to convert the original GEO data to 2 DNA sequencing + 2 RNA sequencing files to directly apply your scripts here ? Thanks.
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This is usually where we try and insist on the necessary pre-requisites explicitly.
For this lesson it might also be the opportunity for providing links to background material which are needed.
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Analogous to recent RNA seq quote.
Want WGBS for 116 samples, sending DNA
sr320 updated
3 weeks ago
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We use merged platform because adding RNA-Seq data require that the same platform is used for all the samples. This is unnecessary because ultimately these platforms get replaced by a generic expressi…
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Project Title: Systematic comparative analysis of single cell RNA-sequencing methodsProject Short Name: scRNAseqSystemicComparisonProject UUID: 88ec040b-8705-4f77-8f41-f81e57632f7dWrangler/s: Chris,,V…
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There is no hurry for this as Andrew is on his placement at SciBite , but during the RNA Central meeting I said we would export the publications to see if they could be used to improve the gene summ…