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I have 3 replicates of spatial RNA+ATAC multiomics data, can SpatialGlue integrate them together? Or I must cluster each slice individually?
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Changhao Li, Rouhollah Soleyman, Mohammad Kohandel, Paola Cappellaro
> The development of highly sensitive and rapid biosensing tools targeted to the highly contagious virus SARS-CoV-2 is critical …
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I was trying to use the `FindConservedMarkers()` function to identify differentially expressed genes across multiple samples, but error messages persisted.
I saw some ongoing discussions about whic…
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Hi everyone
Currently, I am analyzing circRNAs from an RNA-Seq dataset using CIRI2 tools, following the steps outlined in the CIRI-cookbook. Here's how I have proceeded:
1. Checked the FastQC of t…
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I've installed this tool and it is currently under 'Testing Tools' > annotateMyIDs.
Let me know if it working fine and if it needs to be moved under 'NGS: RNA-seq'.
Many thanks!
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### Version
1
### DataCap Applicant
Encyclopedia of DNA Elements (ENCODE)
### Project ID
ENCODE01
### Data Owner Name
ENCODE Data Coordinating Center
### Data Owner Country/Reg…
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Hi the as.loom function is not converting my Seurat object to loom and running into an error message. Is there a reason why this is happening?
```
> dge_E.loom
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Hi developer! Thank you for your state-of-the-art tools hisat-3n! I want to know when I use hisat-3n for RNA-Seq in which C convert to T, should I make alignment twice one for C to T , and another for…
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When a constructed view has multiple tabs, a Magma `/retrieve` request is made for each tab. However, if a user enters "Edit" mode before all those requests return, every time a request returns, the p…
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We have recently acquired some of the single-cell kits from Singleron in the USA and are now ready for the data analysis.
I have to say that I do not remember ever seeing software from a commercial…