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We received the 9 purchased analogues of the original hit [RA-0020084-01](https://github.com/StructuralGenomicsConsortium/CNP27-SARS-CoV-2-NSP14/assets/133207721/a706fd3c-0d56-488e-9eb6-9a1d7b4ce325) …
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From branch 36 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253
JN.1+Orf10:P10S+S:F456L
Query: T22928C,C26753T,C18894T,-G24872T,-A532G
No. of seqs: 50 (Australia 1 Brazil 34 …
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Dear @jsan4christ,
When I open the 'AfricaCDC_shapefile/Africa_fortified_Name_0.tsv' file, I find something like below:
```
version https://git-lfs.github.com/spec/v1
oid sha256:66f408bc3715ae…
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This model is ready for testing. If you are assigned to this issue, please try it out using the CLI, Google Colab and DockerHub and let us know if it works!
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I want to use pangolin naming another vrius, but I don't know how to change the training dataset of pangolin how to re-train the model . I don't know if it is possible, but I think if users has the a…
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data organization
Directory to submit the data to Mac: smb://cfscloud.nist.gov/midas_uploads/2714
__ONT__
files on oneDrive under **SARs-CoV-2-RGTM**
- Raw fast5s
- Basecalled fastqs
- Seq…
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From branch 110 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253
Like LF.8, this is another lineage messed up by inaccurate proposals of DailyCovidCases.
As it clearly emer…
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### Feature Request
We want to switch over from nextclade 2 to nextclade v3.
### Solution
1) re-factor the nextclade json parser script to accomodate the new json format.
2) update the wdl to a…
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From:
https://covid19.bioreproducibility.org/
Some key pieces would be:
- structure determination method (homology models would be from different source)
- species
- major ligand
- structural …
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**Name of the dataset**
Reactome SARS-CoV-2
**Mapping or relevant fields**
Minimal: gene product to pathway
Future: GO-CAM granular representation
see also
https://github.com/geneontolog…