-
Dear Giovanni,
Thank you for your nice software. I am using scAllele for the detection and analysis of variants using scRNA-seq. I wonder how you get the information about 0/1 or 1/1 in Figure 2E of …
-
Hi,
Thank you for providing this package tool to support cancer scRNA-seq analysis. However, I think it has not supported the R version > 4.0?
```if(!checkPkg("scCancer")) install_tmp("scCancer"…
-
# tl;dr
- `salmon alevin` returns an error if the cell barcode length is > 31 base pairs
- This blocks me from using `salmon alevin` for a novel scRNA-seq chemistry that has a 34 base pair cell barc…
-
Hi,
I’m working with scRNA-seq data where three samples are pooled together and we have 20 pools. I used souporcell for demultiplexing without initial whole-genome sequencing SNP data (as it wasn’t…
-
Hi @WPZgithub ,
When I try to install the CEFCON locally on my PC (windows), I encountered the following error:
```python
#install from downloading github files locally
pip install F:\Project\癌细…
-
Hi,
I am using copykat to calculate CNV on a cancer sample, and results showed that not only cancer cells, but also there were a lot of macrophages with CNV.
Could macrophages have CNV in cancer sa…
-
so pleased to use this,but i wonder whether this vae could be used on cpu not gpu?hope for your request
-
I was trying copyVAE on two different datasets to get an idea for its performance and noticed a few small things that I wanted to point out, as potential improvement suggestions or in case someone els…
-
Hi,
Sorry to bother you again.
I'm having difficulties interpreting the provided differential expression values.
I took values from the ASD_DEGcombined.csv file, which seem to be coherent wit…
-
Hello,
Thank you for this amazing tool. I have a question. I have multiple datasets (all 10X chromium) but their experimental procedures are different so basically there is a batch effect.
Is there …