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*Migrating from https://bitbucket.org/snakemake/snakemake/issues/857/add-singularity-arguments-for-specific*
The original issue from Josh Wheaton:
> After playing around with singularity and snakema…
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Hi,
I want to use it in the singularity containers but when I use the demand like:
```
singularity pull docker://pyprophet/pyprophet:2.1.3
```
It is not working. Do you know the correct cod…
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### Description of the bug
Hey!
I was running the nascent pipeline v2.1.1 (v2.2.0 didn't work due to #) for two runs of the same sample.
I encountered an error at the step of `samtools sort`:
…
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Since the Nvidia driver has been updated, it appears that singularity is no longer installed as I keep getting `singularity: command not found` errors? Could we get confirmation on when this will be r…
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The following clients need to be updated to use https://github.com/cncf-tags/container-device-interface/releases/tag/v0.7.1
Note the deprecated APIs.
- [x] podman (@elezar)
* common: https:…
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The packages I need to have are:
- Nanoplot
- Nanofilt
- Fly
- filtlong
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**Before you report an issue...**
- [x] Have you searched for a duplicate report?
- [X] Have you replicated the problem [on the latest release](https://github.com/sylabs/singularity/releases)?
- …
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```
[INFO ] bids
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# Outcomes
* Reduce software dependency
* Reduce average image size
* Manage and maintain containers of computations more easily
* Increase visibility and understanding of what containerized computati…
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**Galaxy Version and/or server at which you observed the bug**
Galaxy Version: 24.1
### Expected behaviour
Singularity mounts no home directory as that can affect reproducibility (settings from h…