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When I did cNMF in spatial transcriptomics, in which the n_counts of one spot could be smaller than scRNA-seq cell. It usually encounter that I have to drop many spots, due to there is no highly varai…
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Excellent work published in Nature Communications! After reading your article, I have some questions regarding the projection of single-cell transcriptomics between species. eg:
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@jahilton writes:
> Solution is to r…
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I was wondering if there is an integrated SPATA object with all the tumor samples? I was wondering if an SPATA object/RDS for all the tumor samples with spatial transcriptomics exist?
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It appears the counts were normalized twice for this analysis.
https://github.com/ZainulArifin1/Jurkat_Transcriptomics_Analysis/blame/c5acc079ec9b6c3023b12637fc0f0c57ac1fd20d/Peter_Jurkat_Figures_S…
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I ran the GrnBoost2 algorithm on my bulk transcriptomics data and now want to predict regulon using cisTarget.
My code raised "could not convert string to float: " error.
ADJACENCIES_FNAME = "../i…
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PLEASE If there is a way to correlate transcriptomics and proteomics data this would be extremely fascinating! Thank you!