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Hello Rayan et al,
I want the unitigs induced by a subset of the kmers from a read set. Is there any way to create a file of kmers that you can read into bcalm2, and then compact into unitigs?
…
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Over yonder at https://github.com/dib-lab/portable-snakemake-workflows/, I am working on a snakemake workflow that runs sgc to build a catlas. I am receiving the following error. I have looked through…
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When providing Illumina and Nanopore reads, the pipeline fails at `rule circularize_final` because there is no directory called `{sample}/3.circularization/3.circular_sequences/sh`, which should have …
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Great tool! I have a quick feature request. An option to output a presence/absence matrix or similar output would be very useful.
On a similar note, do you know of any software that would achieve …
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Describe the bug
I am using getorganelle for obtaining a circular mitochondria and I am getting this message. The gfa is from a canu assembly. Could you help me please? What could be wrong in the gfa…
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When I run abeona v0.40.0 on my data, then I get the following error message:
```
INFO:cortexpy:Log level is INFO
INFO:cortexpy.traverse:Loading graph: g29549.traverse.ctx
INFO:cortexpy.traverse…
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# Bioconda
- [x] Create a `bcalm` recipe for Bioconda @natir
# Flowcraft
- [x] Create an `abyss` component @emreerhan https://github.com/assemblerflow/flowcraft/pull/146
- [x] Create a `bcal…
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Hello,
I am assembling a highly heterozygous plant genome (haploid genome of ~2.6 Gb) from about 42x HiFi coverage (21x per allele).
My priority is to have phased sequences to scaffold later on, so …
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@zgliwen
Let's move your issue over here. please.
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@rafelafrance
hi,
I also had the same…
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```
(base) chooseel@chooseels-MacBook-Pro smartdenovo % ./smartdenovo.pl -c 1 /Users/chooseel/Desktop/20220401-08_phage_nanopore_sequencing/seqtk/phage_OxfordNanopore.fa > phage.mak
(base) chooseel@…