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Code:
./wgbstools init_genome -h
Output error:
Invalid command: init_genome
did you mean init_genome?
MinS1 updated
4 months ago
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when i identity the MHB on WGBS data within a 1M region, i could not get right result and have a core dump;
“”“
*** Error in `/miniconda3/envs/py37/bin/python': free(): invalid next size (fast): 0x0…
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I got an error as "FileNotFoundError: [Errno 2] No such file or directory: '/home/qyjing/softwares/wgbs_tools/references/default'", even though I have set the parameter "--genome hg19 ". Before I run …
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Hi, I was wondering if you or someone has used your algorithm and reference atlas to deconvolute whole genome bisulfite methylation sequence data (WGBS)? I tried using it for some samples but, it pred…
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### Operating System
Other Linux (please specify below)
### Other Linux
RedHat 7.9 (Maipo)
### Workflow Version
v2.9.0-gd9e8593
### Workflow Execution
Command line
### EPI2ME Version
_No resp…
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- https://github.com/ENCODE-DCC/rna-seq-pipeline
- https://www.genome.gov/sites/default/files/Multimedia/Slides/ENCODE2016-ResearchAppsUsers/ENCODE2016_strattan_slides.pdf
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- sample info
- summary statistics of hyper and hypo UMRs (No., average length)
- II-III: 19 vs 22
- III-IV: 22 vs 21
- II-IV: 19 vs 21
- Overlap between II-IV & III-IV
- GREAT: separate hyper a…
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I'm aligning PE WGBS data using a Bismark wrapper for the bowtie2. Recently, I switched from bowtie2 2.4.2 to the latest 2.5.2 and faced a memory issue.
(P.S: bowtie2 2.4.5 works consumes const mem…
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**Version info**
- bcbio version 1.2.9:
- OS Ubuntu LTS 20.04:
**To Reproduce**
Exact bcbio command you have used:
```
bcbio_nextgen.py ../config/CTRL-MDD-S-MDD.yaml -n 72
```
Your yaml …
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Dear Prof. Li
Very good software!
I have a question, because the data we used to analyze WGBS is relatively large, and there are many samples, the sequence alignment process takes more time, so we …