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After annotating my VCF with vcfanno, I'm getting this error from vcf2db (latest version).
```
mcgaugheyd@cyclops:~/ccgo$ python ~/git/vcf2db/vcf2db.py CCGO.b37.bwa-mem.hardFilterSNP-INDEL.VEP.GRC…
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I am getting the following notices when trying to run the tool:
NOTICE: Downloading annotation database http://www.openbioinformatics.org/annovar/download/hg19_ALL.sites.2015_08.txt.gz ... Failed
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```
40000 variant_impacts:65121 effects time: 13.9 chunk time:26.2 375.24 variants/second
Traceback (most recent call last):
File "/home/mcgaugheyd/git/vcf2db/vcf2db.py", line 808, in
VCFDB…
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I was a bit perplexed to see a ClinVar glyph in the gene button, but no corresponding variant in the Ranked Variants card (or variants card).
But when I unclick the "PASS" filter for VCF filter stat…
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[dbNSFP](https://sites.google.com/site/jpopgen/dbNSFP) has grown a lot since exomiser started. Currently we're parsing a lot of seperate resources and only using dbNSFP to extract SIFT, Polyphen and M…
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Currently BA1 hover text is the same as BS1.
@wrightmw says it should be:
"Allele frequency greater than 5% in a population database"
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We are leaving the existing ClinvVar ingest for the GSA release.
@kshefchek & @mbrush noted we are attaching diseases to variants with benign clinical significance. We should only associate diseases …
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Implement variantsets/search according to the schemas. Will hardcode a single variant set. Any fields you're not sure about can ask here.
The hardest part of this task is that we will want to put all…