-
```
40000 variant_impacts:65121 effects time: 13.9 chunk time:26.2 375.24 variants/second
Traceback (most recent call last):
File "/home/mcgaugheyd/git/vcf2db/vcf2db.py", line 808, in
VCFDB…
-
I am getting the following notices when trying to run the tool:
NOTICE: Downloading annotation database http://www.openbioinformatics.org/annovar/download/hg19_ALL.sites.2015_08.txt.gz ... Failed
…
-
I was a bit perplexed to see a ClinVar glyph in the gene button, but no corresponding variant in the Ranked Variants card (or variants card).
But when I unclick the "PASS" filter for VCF filter stat…
-
[dbNSFP](https://sites.google.com/site/jpopgen/dbNSFP) has grown a lot since exomiser started. Currently we're parsing a lot of seperate resources and only using dbNSFP to extract SIFT, Polyphen and M…
-
http://127.0.0.1:4000/?rel0=proband&rel1=mother&rel2=father&name0=&vcf0=https://s3.amazonaws.com/iobio/gene/wgs_platinum/platinum-trio.vcf.gz&bam0=https://s3.amazonaws.com/iobio/gene/wgs_platinum/NA12…
-
-
We are leaving the existing ClinvVar ingest for the GSA release.
@kshefchek & @mbrush noted we are attaching diseases to variants with benign clinical significance. We should only associate diseases …
-
Implement variantsets/search according to the schemas. Will hardcode a single variant set. Any fields you're not sure about can ask here.
The hardest part of this task is that we will want to put all…
-
Currently BA1 hover text is the same as BS1.
@wrightmw says it should be:
"Allele frequency greater than 5% in a population database"
-
As a type of evidence if variant curation, computational data is required to be saved in local. To do it, it's necessary to create new schema file(s), relationships and related test data.
Data model:…