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First, all reads are merged.
We skip the CO_ and CH_ as they contain all reads for hostplant respectively.
```
ls -1 05-CLEAN-MERGED/* | paste - - | grep -v "CO_" | grep -v "CH_" > doc/all-clean-re…
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### Report
hi, I have encounter issues with the estimation of CGC substrate abundance and CGC abundance.
I followed all the steps from the manual and it ran smoothly, including dbcan_utils fam_abu…
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Hi, am running 16s Hifi demultiplexed analysis, after running the last line of code in this chunk:
meta_ana
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### Operating System
Other Linux (please specify below)
### Other Linux
Ubuntu 20.04.6 LTS
### Workflow Version
v1.1.3
### Workflow Execution
EPI2ME Desktop (Local)
### Other workflow executio…
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Longitudinal 16S dataset:
Justin D. Silverman et al 2018. [Dynamic linear models guide design and analysis of microbiota studies within artificial human gut](https://microbiomejournal.biomedcentral.…
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The metaphlan pipeline is providing only the relative abundance assay, and not counts. This is sometimes inconvenient for various standard metagenomic analysis methods and workflows that expect counts…
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Hello,
I have a question about performing LEfSe with trans_diff$new. My microeco version is 1.9.0. My dataset has two treatments (two groups), and each has two subgroups (high frequency and low fre…
NNTLe updated
2 months ago
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Dear authors,
I am attempting to run quast on some metagenomic assemblies. It seems that quast is able to download some of the references, however it terminates after a certain point, even if I repea…
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When using the following in the command line:
_show-tables, _add-metagenomics-study,_ and _add-experimental-data-study_
errors occur. There is not issues within the code itself, but with how it is…
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Test Runs on Napa instance and pre-requisites for Metagenomic workflows.
**Note:**
Context for this test run assumes the the following updates have been applied to the testDB instance:
- Updates to st…