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fw = open('RNA.out','w')
fr = open('3.fasta','r')
dict = {}
def RNA_complement(sequence):
sequence = sequence.replace('A', 'u')
sequence = sequence.replace('T', 'a')
sequence = seque…
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Hi Yang:
I am wandering if users can download and use pre-built HCP or SSU RNA databases of PhySpeTree. It is very useful when users are off-line or suffered from a low connection speed. Thanks.
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I want to use mx.model.FeedForward.load to load pretrained model, but it needs ilsvrc-cls_rna-a1_cls1000_ep-symbol.json.
Can you share ilsvrc-cls_rna-a1_cls1000_ep-symbol.json if you have one availa…
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I have a Seurat object that I extract the (sparse) count matrix from as follows:
```r
count_mat
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Hi,
I am encountering the issue with the var.features which is not present in the meta.data. I tried to manually add the col var.features and still no luck.
`query.projected
apal6 updated
2 months ago
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## Issue: On a chord with both a chord symbol and an RNA symbol, the plugin will just repeat the previous chord.
Steps to reproduce:
- Add chords to a MuseScore document
- Add chord symbols
- Ad…
ghost updated
3 years ago
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[TEXT HERE]
```python
scvi.model.TOTALVI.setup_mudata(
mdata,
rna_layer="counts" if rna_use_raw else None,
protein_layer="counts" if protein_use_raw…
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I have been using TEcount for estimating TEs in total RNA-seq data which has worked great. However, I want to combine this with methylation data and there we have methylation differences at the transc…
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We are using the scripts which you published on this paper and repeat the m6A calling using EpiNano, with the datasets published on Nature Communication (2019) including Curlcakes and yeast datasets.
…
TTT16 updated
3 months ago
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Thank you for providing such a great tool.
In figure 3 of the article, you compared the correlation between CD45 RNA expression and IF before and after denoising. I would like to know how you proc…