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Hello, I am new to KrakenUniq and I’d like to ask you a question.
I have obtained the KrakenUniq reports, and I want to import them in phyloseq. Do you authors suggest a best practice? Working with K…
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Dear Benjamin,
I am reposting issue #83.
I have the following set of samples (16S rRNA reads), which were sequenced together on the Illumina (MiSeq 2 x 300 bp) platform:
Soil: extracted/PCR/se…
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[HUMAnN 3](https://huttenhower.sph.harvard.edu/humann/) provides functional predictions for metagenome profiles. An importer to `MAE` or `altExp` in *mia* would be useful as this is a common format.
…
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Dear Dr Huang，
I want to install this package, however I tried a few methods ways but not of them worked.
1. by conda, error message is message not found (I checked on anaconda, this package is no…
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Hi!
I'm trying to run a PGLMM using 5 random effects, one of which is nested. However, I keep receiving the below error:
Error in chol.default(re.i[[3]]) :
the leading minor of order 3 is no…
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Dear developer,
Congratulations for this great tool.
I have a problem while trying to convert my phyloseq object to microbiomeStat object.
It seems it does not found midpoint function.
I ins…
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Hi,
I tried to install your package on Rstudio with R version 3.6.0 with the code you provided in the tutorial (I installed devtools as well); However, the installation process failed with the follo…
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Hi,
Is it possible to implement spiec.easi using an OTU table (that is in a relative abundance format)?
The documentation reads "For a matrix, non-normalized count OTU/data table with samples on r…
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You can set package homepage from the settings. It is automatically generated with pkgdown.
The result will be like:
https://microbiome.github.io/mia/
@ake123 can advice how it is done if you …
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The NMDC Newsletter signup form contains a reference to its former maintainer.
I recommend updating the form so it contains a reference to its current maintainer instead.
https://microbiomedata.…