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Hi Leszek,
I ran pyScaf to compare my genome with other closely related species. My main goal was to generate dotplots for them. I ran the command something like this:
```
python /shared/softwa…
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I ran circlator with option --assemble_not_only_assembler and got an error:
svkazakov@svkazakov /media/hdd/genome/assembly/B.pumilus_7P/new2/plasmid % circlator all --threads 6 --verbose --merge_mi…
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When running IVA on full genome influenza samples and enabling multiple threads, I get the following smalt error:
smalt.c:807 ERROR: The two FASTA/FASTQ input file have different numbers of reads
…
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Dear Maria,
Thank you for the great software.
In the plot generated by using mummer coordinates in genome ribbon, is there a way to increase the intensity of color of the lines between the two sequ…
Homap updated
7 years ago
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Finally I'm back with my issue which wasn't really solved. It appears that it depends of my input dataset. Have you an idea of the cause of the error?
```
average_nucleotide_identity.py -i /home/mgon…
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Hello,
I've been trying to run ANI on divergent sequences and the result alway give 1.0 identity for all pair of genomes...
These are simulated sequences but clearly giving the alignment here it soun…
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Hi there,
I tried to run quickmerge to combine hybrid assembly (using spades) with pacbio only assembly (using canu) and got the following error message: libc++abi.dylib: terminating with uncaught ex…
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Hello, guys.
I installed python Version 3.5.2 to set up pyani.
But after performing with pip3 install pyani command, I have an error in the command python setup.py .
How can I solve this problem??
…
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# It prints it as `.7.0` instead of `3.7.0` below?
I'm using `circlator version 1.2.0`
```
Using bwa version 0.7.13 as /bio/linuxbrew/bin/bwa
Using nucmer version 3.1 as /bio/linuxbrew/bin/nucmer
U…
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Hello, I was testing canu on about 20x and 90x of the Drosophila data from PacBio using default parameters and got some serious mis-assemblies (~50% and >90%, respectively). Attached are alignments of…