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Hi,
Right now, I only have the single-end RNA-Seq for the disease and control samples I am studying. I am wondering if there is a good way to evaluate whether the single-end results are acceptable,…
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- 3 virus grps
1. reference
2. redefining invertebrate rna virome data? Zika?
3. segmented, assembled (FMTV)
Zika (including raw), FMTV, study Holmes, Flaviref, Flavi all (deduplicate)
- q:…
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GO:0000120 RNA polymerase I transcription factor complex
A transcription factor complex that acts at a regulatory region of a gene transcribed by RNA polymerase I.
I have
+ RNA polymerase I …
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Hi,
I recently upgraded to Seurat v5 and now I cannot save h5seurat files anymore. I can still load (loadh5seurat) the files I saved with the previous version of Seurat, but I am not able to save fil…
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Afternoon,
I have completed several runs of Braker on a novel aphid genome with rna-seq reads.
After go-enrichment I found out only about tenth of the reads had a match to go terms for the neare…
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I am struggling about how to infer strand information with REDItools by using -s parameter for stranded RNA-seq.
For sure by choosing different -s parameter [0/1/2/12] for one sample, the substitutio…
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Top-level issue to contain sub-tasks:
- [ ] in vivo cortex development bulk RNA-seq (#8)
- [ ] in vivo cortex development single-cell RNA-seq (#9)
- [ ] stem cell models of human cortex developm…
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As a TL I would to check the report consistency, identify and flag inconsistencies so that we can improve confidence in the report.
**Acceptance Criteria**
- [ ] Identify report rows where the m…
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Hello. Thank you for this package. I'm doing an integration analysis using more than 40 scATAC samples. However, I do not have scRNA data from the same cells. I tried doing the label transfer using th…
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I'm following [Bassez](https://carmonalab.github.io/ProjecTILs_CaseStudies/Bassez_BC.html) tutorial. However, during classification step I encounter the following error:
```
> DefaultAssay(ref_cd8…