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Hi all,
I'm trying to run svclone on the output of an in-house variant calling algorithm which doesn't have the most precise breakends. So for example, in the following DUP, the breakends defined b…
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### Data Owner Name
NIH - National Institute of Health
### Data Owner Country/Region
United States
### Data Owner Industry
Life Science / Healthcare
### Website
https://www.nih.gov/
### Social…
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### Data Owner Name
NIH - National Institute of Health
### What is your role related to the dataset
Data Preparer
### Data Owner Country/Region
United States
### Data Owner Industry
…
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Hi, thank you for great tool for single cell Feature Barcode Analysis,.
Now, I download [fastq files](https://trace.ncbi.nlm.nih.gov/Traces/?view=run_browser&acc=SRR15904933&display=data-access) from…
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Hi, I am facing this "Failed to call external services. " issue when I run`./fasterq-dump –-split-files -O /Volumes/LaCie SRR3140235`. Can I please get some help? I am on a MacOS with sea version 3.0.…
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Hi,
I wanted to create a small(ish) image from micromamba, which I managed to accomplish using a multi-stage build - in particular using
```
FROM scratch
COPY --from=0 / /
```
and got an image…
wwood updated
9 months ago
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As needed by @QJohn2017 a setup script for tianhe2 is needed (see #89). Since tianhe2 uses SLURM for scheduling, either the `./prepare_job` script needs to be adjusted to an `./prepare_job_tianhe2.sh`…
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Hi,
I would like to congratulate you all for this amazing work of assembling and sharing this data publicly.
Recently I downloaded the raw subreads data (in bam format) as indicated in https://…
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On the website, it indicates that Cell Ranger requires the FASTQ files ending with _001.
https://kb.10xgenomics.com/hc/en-us/articles/115003802691-How-do-I-prepare-Sequence-Read-Archive-SRA-data-fro…
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Hi, I have been able to use the SRA Toolkit to get fastq files and split them, but this last time I've tried, I keep getting the same error.
I have tried downloading the latest version, and checked m…