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Hi,
I utilized exomePeak2 for peak detection in RNA samples and observed that many methylated regions corresponded to introns. This finding surprised me since I did not specify the mode argument, a…
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### Contact Details
_No response_
### What happened?
I'm getting the following error for large (>1kb) RNA sequences using the Python API when computing the partition function via `fc.pf()`.
```…
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It turns out that our default RNA-seq pipeline happily analyzed IonTorrent or ABI data and produces seemingly reasonable data
[GSE67124](https://gemma.msl.ubc.ca/expressionExperiment/showExpression…
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Dear Dr Markus Müller,
I was able to successfully run the scripts until test_voting_classifier.sh.
However, afterwards, I ran into errors.
More specifically, one of the scripts requires the prese…
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I have tested three models, ade20k_rna-a1_cls150_s8_ep-0001, voc_rna-a1_cls21_s8_coco_ep-0001, and voc_rna-a1_cls21_s8_ep-0001. All of them produced very very low mean ious. Please let me know the ver…
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Hello,
I am getting an empty CDS file from running gff2seq with no error message.
My command is `anchorwave gff2seq -i GCF_003119195.2_ASM311919v2_genomic.gff -r GCF_003119195.2_ASM311919v2_genom…
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Hello
I call superstr in the following way
`superstr-outliers.py --pathogenic -i results/superstr/multiparse/fame_rna --bootstrapCI -is -m results/superstr/manifests/fame_rna.tsv --min_len 30 --…
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hello,
Both pip and conda install show different usages as compared to shown on the readme.
Conda install : https://anaconda.org/bioconda/rna-seqc
usage from conda install:
~/anaconda3/bin/r…
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Hello
I have two viral contigs of approximately 3500bp from the same region of a genome. The two contigs differ by just 1%. Virsorter is run as:
virsorter run -w test.out -i test.fa --min-length 150…
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ETQ utilisateur :
- je veux rechercher sur une zone géographique donnée (ville, département ou région)
- je veux faire une recherche par nom, RNA, SIREN ou SIRET
- je veux faire une recherche par nom…