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### Description of the bug
I believe this could be a bug as I can't see any reason as far as I know for why this is not working.
![image](https://github.com/nf-core/rnasplice/assets/68851733/a131f13…
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Hello,
I am running a Bulk RNA-seq analysis using STAR and hg38 and I have this error during alignment:
File "/mnt/hcctcga_a/groups/hcctcga/lab_members/tdelisper/bcbio/anaconda/lib/python3.7/site-…
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In default Foldseek uses its local 3Di+AA strutural alignment ...
related question:
is it possible separate this function into standalone call?
I have 2 AA sequences + 2 corresponding 3Di sequen…
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Running v. 2.0.3
```
reademption align -p 40 --poly_a_clipping -f analysis_reademption -q -g -S
reademption coverage -f analysis_reademption -p 40
```
In the coverage files, a constant value…
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### Description of the bug
Hi everyone,
I am confused since I am getting a bug that seems to have been fixed in an earlier version of nf-core rna-seq:
https://github.com/nf-core/rnaseq/issues/1…
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Hi
I get the follwing error when trying to build a reference, any help is greatly appreciated! Thanks
FTP
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I am trying to reproduce your PGWAS results on the sparc (a.k.a massachusetts) dataset. Based on the figures in the paper (e.g. figure 8), I was expecting ggcaller to take ~100 minutes. Instead, it is…
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I got an error when running PEPATAC example:
File "/home/xiutao/software/pepatac/pipelines/pepatac.py", line 1101, in check_alignment_genome
rr = float(pm.get_stat("Raw_reads"))
TypeError: …
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## New feature
load any nextflow.config that is at the same level as a .nf
## Usage scenario
It would greatly help the re-usability and share-ability of nf-core modules/subworkflows.
## S…
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note that TopHat has entered a low maintenance, low support stage , so does the circexplorer2 support hisat2 ?