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Greetings,
Thanks for the amazing tool.
I `conda install bioconda::lsabgc` to install the package. Later I database using `setup_annotation_dbs.py` and run the test commands. Upon which it says "u…
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Thanks again for the great tool! I noticed some differences in CDSs when annotating/calling with prokka vs p(y)rodigal. As I was a bit surprised, I investigated further.
For pyrodigal/prodigal, the…
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**Submitting author:** @pierrepeterlongo (Pierre Peterlongo)
**Repository:** https://github.com/pierrepeterlongo/back_to_sequences/
**Branch with paper.md** (empty if default branch):
**Version:** v0…
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PandaGUT provides new insights into bacterial diversity, function, and resistome landscapes with implications for conservation – Guangping Huang et al. – Microbiome 2023
https://microbiomejournal.b…
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Jon Sanders run into the following issue during `anvi-summarize` and sent the following traceback to anvi'o Slack:
```
[09 Dec 20 09:32:25 Summarizing 104 of 159: 'Bin_3_32'] Creating the FASTA fi…
meren updated
4 weeks ago
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Dear Dr. Pieter-Jan Van Camp,
I am writing to seek your guidance regarding an issue I encountered while trying to run the MGS2AMR pipeline described in your article "MGS2AMR: a gene-centric mining …
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Would it be possible to output the model results i `json`? In case it helps, I made two tentative functions:
```
library("jsonlite")
export_curve
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Hello,
I am trying to get Diamond output that includes taxonomic information (similar to sscinames and sskingdoms in blast) and have made a database which included the –taxonmap and –taxonnodes p…
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Due in Dev Feb 23rd
Part of the effort to make the submission portal accommodate JGI user projects.
The current "JGI MG" tab was created based on short read data. Long read data will use the sa…
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### Operating System
macOS
### Other Linux
_No response_
### Workflow Version
v1.1.3
### Workflow Execution
EPI2ME Desktop (Local)
### Other workflow execution
_No response_
### EPI2ME Versi…