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lmrodriguezr
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nonpareil
Estimate metagenomic coverage and sequence diversity
http://enve-omics.ce.gatech.edu/nonpareil/
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Suggestion on how to debug 'buffer overflow detected' error?
#68
jfy133
closed
1 day ago
8
Default output prefix not very friendly
#67
jfy133
closed
1 week ago
3
Error: "The file provided does not have the proper fastq format" or hanging when supplying gzipped files
#66
jfy133
closed
1 week ago
3
Unable to locally compile 3.5.0 following instructions on website
#65
jfy133
closed
2 weeks ago
5
"std::bad_alloc" and "Cannot open the file" errors
#64
hkaspersen
closed
1 week ago
1
Output model results in JSON
#63
fgvieira
opened
7 months ago
1
Stats summary return a matrix of lists
#62
fgvieira
opened
1 year ago
0
Missing similarity (-S) option in usage output
#61
danpal96
opened
1 year ago
0
nonpareil failing with too few reads
#60
fgvieira
closed
1 week ago
0
Nonpareil exiting after "Evaluating consistency"
#59
sterrettJD
opened
1 year ago
0
docs on the curve plot
#58
nick-youngblut
opened
1 year ago
0
Data underlying figure 2 in doi 10.1128/mSystems.00039-18?
#57
taylorreiter
closed
1 year ago
3
No output files
#56
daisykuma22
closed
1 year ago
2
Bug in arrow placement with R packages?
#55
bramvandijk88
closed
1 year ago
2
input files for Nonpareil 3
#54
INFINITY1993
opened
2 years ago
2
Fatal error: Reduce the number of query reads (-X)
#53
dtsementzi3
closed
2 years ago
1
Re-add factor to curve?
#52
sjaenick
closed
2 years ago
1
Error in file(con, "r") : invalid 'description' argument
#51
ZoeHansen
closed
2 years ago
2
Throat metagenomes
#50
andrewjmc
closed
2 years ago
2
number of initial reads
#49
lalalagartija
closed
2 years ago
1
Not reproducible results
#48
VGalata
closed
1 week ago
5
meaning of warning / use of -L in kmer mode
#47
handibles
closed
2 years ago
1
Using np to target subsampling
#46
andrewjmc
closed
2 years ago
1
Systematic bias at low coverage (under 20%)
#45
tylerbarnum
opened
3 years ago
0
How to set -X and -n
#44
Thomieh73
closed
3 years ago
2
nonpareil.curve.batch - double legend?
#43
russejenn
closed
4 years ago
3
"Picking N random sequences" forever
#42
nick-youngblut
closed
4 years ago
5
Paired end reads (again!)
#41
andrewjmc
closed
3 years ago
0
extracting out "final coverage" , "actual effort" and "required effort" in numbers from .npo file
#40
Jigyasa3
closed
4 years ago
1
Better visualization of Nonpareil.curve.batch for 200 samples
#39
Jigyasa3
closed
4 years ago
3
Obtaining diversity estimate
#38
snayfach
opened
4 years ago
3
Read length fatal error
#37
sturne29
closed
4 years ago
7
Unable to find required package ‘Nonpareil’ in the R package
#36
shimingt
closed
5 years ago
1
Can't process gzipped fastq
#35
ohthetrees
closed
2 weeks ago
13
Nonpareil curve output file
#34
abenaa07
closed
4 years ago
2
The problem with xlim
#33
IM-han
closed
6 years ago
4
error in Nonpareil.curve
#32
IM-han
closed
6 years ago
4
Conda Installation Breaks R (everytime)
#31
Roli-Wilhelm
closed
4 years ago
2
Segmentation fault (core dumped)
#30
Freemacl
closed
6 years ago
3
Input from stdin
#29
koopkaup
closed
1 week ago
3
Strange output filenames
#28
boulund
closed
1 week ago
0
Diversity index formula
#27
koopkaup
closed
2 years ago
1
Add doc about Galaxy installation
#26
bebatut
closed
6 years ago
0
Add doc about Conda installation and container usage
#25
bebatut
closed
6 years ago
0
Installation of nonpareil via conda
#24
bebatut
closed
6 years ago
4
MPI version installation error
#23
shaman-narayanasamy
closed
1 week ago
2
Installation fails with R
#22
shaman-narayanasamy
closed
6 years ago
1
make nonpareil-mpi failed: enveomics/SeqReader.o: No such file or directory
#21
wwood
closed
1 week ago
2
Infinite loop when subsampling more reads than available with -T kmer
#20
lmrodriguezr
closed
7 years ago
1
Fatal error: Cannot open the file: reads.fa
#19
shimingt
closed
7 years ago
6
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