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## Short description of the problem
`anvi-get-sequences-for-hmm-hits` fails saying the expected output from muscle is missing when large genes are present.
## anvi'o version
```
Anvi'o .....…
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Our team has conducted WGS against various human cell lines in order to validate the presence of a molecule we were hoping to detect. We then sought to analyze sequence integrity (SNPs and indels) of …
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### Description of the bug
Dear All,
As anticipated here, #71, I am now facing an issue with run_stager command. Here are relevant info. Many thks
` run_stager.R CP-Brain DEXSeqResults.CP-Brain…
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Hi @naumenko-sa,
for the [problem](https://github.com/chapmanb/bcbio-nextgen/issues/1395) with the report we can discuss here.
That report is a template that won't work in all analysis sadly. Can …
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Hi there,
Thank you for the wonderful tool. I was trying to characterize the precision and sensitivity of bambu in my hands using some of the long read spike in data you have provided in the sg-nex…
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Hi Steven,
I downloaded both HiCUP and the test datasets following the "How to run HiCUP" youtube video, created Bowtie2 indices, and made a digest file. I edited the test config file, following t…
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**I am trying to run pepatac tutorial based on this [instruction ](https://pepatac.databio.org/en/latest/tutorial/).
After running looper in dry mode, I get this error:**
`Looper version: 1.3.2
…
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Hi @FelixKrueger – I'm trying to limit the memory and CPU usage to make sure other labmates can use our shared server and also my job runs at a reasonable speed. I have two questions / concerns:
- Wh…
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Hello,
Please am trying to install parsnp on my mac
./autogen.sh
Can't exec "aclocal": No such file or directory at /usr/local/Cellar/autoconf/2.71/share/autoconf/Autom4te/FileUtils.pm line 274.
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hello, RIK
when I use tama_collapse.py I found Error with exon end earlier than exon start
54827318 54827318
['m64041_201001_163935/150406967/ccs', 'm64041_201001_163935/99746185/ccs']
It …