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The estimateCellCounts2() function is consistently giving me the warning message: ```In asMethod(object) : NAs introduced by coercion```
I have included the workflow below:
```> library(FlowSorted…
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Resolve wrappers url to wrapper source file when using custom wrappers repo folder
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Inclusion of literal tab characters in the bwa command line (notably, when passing a @RG read group line) leads to inclusion of literal tab characters in the @RG portion of the CL: field within the @P…
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This would likely make a good worked example / test case:
> Landa et al. (2021) Diversity of Phytophthora Species Detected in Disturbed and Undisturbed British Soils Using High-Throughput Sequencin…
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Hi Christoph,
Is it possible to use two or more Illumina libraries (with different insert sizes) as inputs to a single MITObim run?
In the MIRA manifest, I can indeed specify multiple libraries to …
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**Describe the issue**
Pipeline fails at HaplotypeCallerGVCF
```
Error executing process > 'single_sample_wgs:run_HaplotypeCallerGVCF_GATK (30)'
Caused by:
Process `single_sample_wgs:run…
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@sandraTriebel see here a nice guide for Nanopore/ hybrid genome assembly:
https://achri.blogspot.com/2019/12/nanopore-bacterial-genome-assemblies.html?m=1
Whereas here the focus is fast executi…
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Dear developers & community,
I am assembling the genome of a bacterial strain and I have long-reads (nanopore) and short (illumina).
I first assembled the long alone with Canu, from where I got 12…
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