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Hi all,
I am using align_trim.py script to remove primers from the alignment. In me case, we have performed SARS2 amplification with v3 primer set, and then sequenced with illumina (Miseq).
I …
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falco version 0.3.0
Fastqc and falco results are differrent for section "Per base sequence quality"
Per base sequence quality seqtion to compare in results:
[pbsq_falco.txt](https://github.com/…
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Hi there, trying to get the following to work, however kept meeting this error with 2 different .fa anf .fai. can help to enlight me what is wrong?
methylartist wgmeth --bam sample.sorted.minimap2.…
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Hi,
Thanks for the gtdb-taxdump. I´m working on Silva , is there any available tax dump ?
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I have an issue related to somewhat atypical usage of nanopolish.
I am running nanopolish to call variants on around 500 contigs with sequences from related gene families (obtained through target e…
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Hi,
Thank you for developing and maintaining this project!
I am trying to extract the raw signal using SquigglePull.py.
It seems to work, but the .tsv files were containing nothing.
Can you help…
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When setting the parameters below, do these need to be included in the dentist.json config file? and if so in which section?
--max-insertion-error
--min-anchor-length
--min-reads-per-pile-up
--m…
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Given that SortMeRNA is compatible with PacBio, could it also be used for Nanopore long reads?
Thanks,
Patrick
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Hi,
Thank you for developing SPAdes for hybrid assembly.
I tried to assemble Illumina pair-end with Oxford Nanopore Sequence for plant mitochondrial genome assembly.
Before carried out, I used B…
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Dear Schulz Lab,
thank you for providing such an interesting tool.
No matter if I try to run the fusion detection or quantification tool with the downloaded references from ensembl, I get these …