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Following on the suggestion by @Lestropie (this [commit](https://github.com/sina-mansour/UKB-connectomics/commit/debd48665b25927b52bbce7b0b1bd73c0e3e7f8c)):
RS:
- We had discussed the prospect of …
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Hi, I used the codes you provided and the HCP dataset provided by ST-GCN (https://github.com/sgadgil6/cnslab_fmri) for resting-state fMRI classification, but found that the performance of STAGIN was …
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* visualqc version: 0.3.5 (installed through pip)
* Python version: 3.7
* Operating System: Linux
### Description
I just tried to run a normal `visualqc_freesurfer` command, but without succes…
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For some datasets (e.g., ADNI, Cam-CAN), there are no opposite PE dMRI images for distortion correction with TOPUP. Consider adding an estimate for distortion correction, for example: https://github.c…
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Possible duplicate of #275, may be related to #554.
I'm working with a large dataset comprising mostly middle-age and older adults. So far, there are around 75 participants. For most of them, the b…
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I would probably do "Human" at a layer above where it is now; ie, "Human/label/...", "Macaque/..." this way the templates, masks, parcellations, and transforms associated with a single species are in …
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### Description of issue
Thanks for developing such an amazing toolbox. I just have a couple of questions.
1. I was wondering whether the neuromaps in this toolbox include subcortical regions. If I …
zqsha updated
2 years ago
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The colormap for DiFuMo parcellation maps seems to have changed compared to previous versions. For some granularities, the contrast is too low so that regions are difficult to distinguish:
![grafik…
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as of v0.3a2
min repro:
```python
import siibra
atlas=siibra.atlases['rat']
r=atlas.get_region('external medullary lamina, auditory radiation')
```
expected result, region `external medulla…
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Hi everybody,
I run de pipeline to perform the whole-brain tractography parcellation using the WMA and the anatomically ORG white matter atlas.
This includes the “wm_harden_transform.py” to transfor…