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Do CANU generate a file for the final assembly that can be used as input for Bandage?
https://rrwick.github.io/Bandage/
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I get the following error in `draft_assembly` step after the process is running for quite a while:
```
...
In total 450 lanes
0
482901
list size:0
list size:0
list size:0
list size:0
list size:0
list…
ghost updated
7 years ago
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Hi,
I am new to canu, and using it for assembling my species genome (400MB). I started with 40x coverage, and after correction, i got corrected reads as 16x coverage. While canu is still running, i…
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Hello,
The tigInfo and readToTig files write about contigs. My understanding is that bogart is a unitigger and not a contigger. Is the utgcns consensus algorithm turning unitigs to contigs or the con…
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I completed an assembly using errorRate=0.025 with no issue, but when I ran it with errorRate=0.035, I encountered the following error (in the unitigger.err file):
Graph error threshold = 0.105 (10…
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Says "If neither -t or -s specified, just saves output statistics." but `-t` is threads and `-s` doesn't exist?
```
usage: mccortex63 clean [options] [in2.ctx ...]
Clean a cortex graph. Joins gra…
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I got the following error message:
canu failed with 'failed to generate unitigs. Made 2 attempts, jobs still failed'.
Unitigger.err says:
Graph error threshold = 0.150 (15.000%)
Max error thr…
fbemm updated
8 years ago
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Spent a little time today with v1.4.0 after a lengthy hiatus. My [automatic test workflow](https://github.com/dnanexus-rnd/dxvg/blob/master/run_tests.py#L53) builds a 1000G graph for chromosomes 21 an…
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Hi Canu! I've run canu v1.2 to completion once with a ~30X coverage dataset, partially run canu v1.2 on a ~20X coverage dataset (finished correction/trimming stages), and after the v1.3 release, I'm …
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Hi,
I am trying to error correct some pacbio reads and have split my data into chunks of 100MB each successfully. I then proceeded with error correction using unitigs that I have constructed with ill…