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### Description of the bug
For some reson, canu is not running on ONT data (`GenomeSize` specified, reads provided with `LongFastQ`, `R1`, `R2` and `Fast5` are set to `NA`).
### Command used an…
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Hello everyone,
I recently submitted a job to dorado correct, here is my script :
dorado correct \
--threads 24 \
--device cuda:0 \
--batch-size 128 \
--verbose \
--mod…
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Hello,
I'm using racon to polish a close-to-complete genome assembly where most contigs have telomeres on the end. Racon is removing many of these telomeres. Is there any way I can avoid racon remo…
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# Issue Report
## Please describe the issue:
Running dorado basecaller 0.7.0 with modification calling using direct RNA model 0.5.0 results in error: *** Error in `dorado': double free or corrup…
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Hello,
Executed code:
shapemapper --name example --target ../FASTA/RNA.fasta --out RNA_shapemap --amplicon --modified --R1 100mM_1M7_RNA_R1.fastq --R2 100mM_1M7_RNA_R2.fastq --untreated --R1 DM…
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Hi dear developer,
I tried to use nanopore ultra-long reads to correct structural error in my hifi assembly. The inspector.py module did detect 443 structural error in the structural_error.bed, how…
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Dear pod5 developers,
please consider to create a conda package for pod5.
I tried to create a pod5 recipe from the `pypi pod5` package myself using `grayskull`, but it fails:
> There is no sdis…
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Dear developers,
I would like to correct/break a scaffold after running ragtag with nanopore long reads. I have installed LongStitch and dependencies with mamba.
This is my input directory
```
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I am in the process of determining whether sourmash is the right tool for my metagenomic analyses. I am mostly using ONT data at the moment. Similar to previous posts (e.g. https://github.com/sourmash…
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I'm trying to run the read simulator in the perfect mode with the following code:
`simulator.py genome -rg simulated/simulated.fasta -k 6 -b guppy -s 1 --perfect --fastq`
But it generates an err…