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## Correction here
### **C-terminus** was truncated, not. central domain. check Joe's reply in https://github.com/opensourceantibiotics/murligase/issues/36 but does not influence the logic of the ide…
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I recently used RFAA protein_sm prediction, but it is very slow on our HPC (depend on protein size, the running time can be range from 15~90 minutes). Also, it met GPU OOMs for large protein system.
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Hi Will,
Thanks for your great tool!
I was trying to use mokapot in combination with sage outputs to look at enzyme free peptidomics samples. Unfortunately, when I run this with a simple subset an…
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Hi all,
I observed a very misleading behaviour with the color scale : the default color scheme is different from one plot to another, which is extremely misleading.
```
h5path = '/home/user/D…
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* Show multiple entropy plots, one for each gene/protein
* Change dropdown selector to a multi-select dropdown (same as in metadata)
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I'm running some metatranscriptomic samples through grist, and getting very little classified with the below parameters. I'm wondering if I should lower the threshold below 5e3, and/or if I should use…
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We want the demo at the end of this year to be related to inborn errors of metabolism. We therefore need clean sources of metabolic data. Right now, a lot of folks are getting relationships from plac…
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this is not a "soon" issue, but there appears to be substantial opportunity for using amino acid k-mers to find contamination...
e.g. https://github.com/bluegenes/2020-gtdb-smash/issues/1
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add the protein interaction data from wormbase.
note that these encompass genetic and physical interactions, as well as group-wise interactions in complexes, which requires a bit of modeling.
the …
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