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wfondrie
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mokapot
Fast and flexible semi-supervised learning for peptide detection in Python
https://mokapot.readthedocs.io
Apache License 2.0
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Add parquet and sqlite support; add NNLS-based PEP and Q-value calculation
#119
gessulat
opened
2 weeks ago
7
[Feature Request] mokapot output as a pepXML file
#118
sciordia
opened
2 months ago
0
Enzyme Free Digestion results in "0 digested proteins"
#117
jonathan-krieger-bruker
opened
6 months ago
1
sorting proteins for protein group FDR
#115
bmx8177
closed
7 months ago
1
Issue with decoy prefix when trying to get protein level confidence.
#114
louisebuur
opened
7 months ago
2
Can't get protein level confidence. "IndexError: index -3 is out of bounds for axis 0 with size 1"
#113
roushrsh
opened
8 months ago
3
updated gh actions
#112
jspaezp
closed
8 months ago
1
Add workflow for building Windows installer
#111
RalfG
opened
8 months ago
3
Mokapot sub commands
#110
gessulat
opened
9 months ago
0
File schema via pydantic
#109
gessulat
opened
9 months ago
3
WIP: intermediary file format specification
#108
gessulat
opened
9 months ago
0
Multi-threaded writing of output files
#107
gessulat
opened
9 months ago
2
Add copy to multiprocessing
#106
wfondrie
closed
9 months ago
1
Replace logging.[...] with LOGGER.[...]
#105
RalfG
closed
9 months ago
3
max_workers issue
#104
wenbostar
closed
9 months ago
1
Decoy Prefix results in many unmapped peptides
#102
jonathan-krieger-bruker
opened
1 year ago
1
[Question] executable(e.g. pyinstaller)
#101
timosachsenberg
opened
1 year ago
7
Feature/improve speed and limit memory (#11)
#100
sambenfredj
opened
1 year ago
2
Main
#99
sambenfredj
closed
1 year ago
0
Lint with Ruff and add other pre-commit hooks
#98
wfondrie
closed
1 year ago
1
Combine mokapot scores from multiple files
#97
wfondrie
opened
1 year ago
0
[Breaking enhancement] Swap out Pandas for Polars
#96
wfondrie
opened
1 year ago
1
Fixed typo in contributing.rst
#95
danielgeiszler
closed
1 year ago
0
Update dataset.py
#94
danielgeiszler
closed
1 year ago
0
Migrate to main
#93
wfondrie
closed
1 year ago
1
[Pitch] Lazy data loading
#92
jspaezp
closed
1 year ago
1
✨ Add `seed` keyword to deterministically shuffle splits
#91
sjust-seerbio
closed
1 year ago
2
[Upgrade] Migrate from Pandas to Polars
#89
wfondrie
opened
1 year ago
3
changed metadata import to allow the groups arg
#86
jspaezp
closed
1 year ago
4
[BUG] `importlib.metadata` doesn't allow `groups` kwarg in Python <3.10
#85
wfondrie
closed
1 year ago
0
Add scipy to the Docker image.
#82
wfondrie
closed
1 year ago
0
Add procps to the docker image
#81
wfondrie
closed
1 year ago
0
Fix Docker workflow
#80
wfondrie
closed
1 year ago
0
Add a custom Docker image
#79
wfondrie
closed
1 year ago
0
Make Confidence objects picklable.
#78
wfondrie
closed
1 year ago
0
migration to pyproject toml
#77
jspaezp
closed
1 year ago
2
Migration to full pyproject toml
#76
jspaezp
closed
1 year ago
1
Feature/plugin arch
#75
jspaezp
closed
1 year ago
10
[Pitch] Plugin architecture
#74
jspaezp
closed
1 year ago
5
[Upgrade] Migrate to full pyproject.toml build
#66
wfondrie
closed
1 year ago
3
Fixed grouped scores and added test
#65
wfondrie
closed
1 year ago
1
[BUG] Different scores for LinearConfidence and GroupConfidence
#64
bittremieux
closed
1 year ago
2
[BUG] 'GridSearchCV' object has no attribute 'intercept_'
#63
lazear
closed
1 year ago
3
Fixed need for intercept
#62
wfondrie
closed
1 year ago
1
AttributeError when using alternative machine learning algorithms
#61
surya-money
closed
1 year ago
1
Fix missing values caused by logging
#60
wfondrie
closed
1 year ago
1
Docstring fix
#59
surya-money
closed
2 years ago
1
Change CLI argument and minor style changes
#58
wfondrie
closed
2 years ago
0
Supervised learning step
#57
surya-money
opened
2 years ago
1
Refactor trained models implementation
#56
sambenfredj
closed
2 years ago
0
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