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wfondrie
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mokapot
Fast and flexible semi-supervised learning for peptide detection in Python
https://mokapot.readthedocs.io
Apache License 2.0
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[BUG] 'GridSearchCV' object has no attribute 'intercept_'
#63
lazear
closed
2 years ago
3
Fixed need for intercept
#62
wfondrie
closed
2 years ago
1
AttributeError when using alternative machine learning algorithms
#61
surya-money
closed
2 years ago
1
Fix missing values caused by logging
#60
wfondrie
closed
2 years ago
1
Docstring fix
#59
surya-money
closed
2 years ago
1
Change CLI argument and minor style changes
#58
wfondrie
closed
2 years ago
0
Supervised learning step
#57
surya-money
closed
3 weeks ago
1
Refactor trained models implementation
#56
sambenfredj
closed
2 years ago
0
[Upgrade] Migrate to using `numpy.random.Generator` for random number generation.
#55
wfondrie
closed
1 year ago
0
First commit
#54
surya-money
closed
2 years ago
1
Added .idea files to .gitignore and tweaked docstring in model.py
#53
surya-money
closed
2 years ago
1
fix non-deterministic multi-threading and reproduce results using trained models
#52
sambenfredj
closed
2 years ago
4
Update the documentation
#51
wfondrie
closed
2 years ago
1
Enforce `min_length` with `clip_nterm_methionine=True`
#49
wfondrie
closed
2 years ago
0
Corrected the mentioning of FlashLFQ
#48
tkschmidt
closed
2 years ago
0
Update data links in docs
#47
wfondrie
closed
2 years ago
0
Prepare release v0.8.0
#45
wfondrie
closed
2 years ago
1
Improve runtime
#44
sambenfredj
closed
2 years ago
12
pepxml parser Error: float() argument must be a string or a number, not 'NoneType'
#43
stsour
closed
2 years ago
2
[BUG] ValueError: X has 31 features, but StandardScaler is expecting 19 features as input.
#42
jamc1996
closed
2 years ago
4
Fix typo in open_modification_bin_size help text
#41
mobiusklein
closed
2 years ago
1
added support for subset > data size
#40
wfondrie
closed
3 years ago
1
added support for subset > data size
#39
jspaezp
closed
3 years ago
2
[BUG] CLI fails when passing a --subset_max_train smaller than the data
#38
jspaezp
closed
3 years ago
6
[Feature Request] Explicit support for DIA results.
#37
wfondrie
opened
3 years ago
0
fixed bug where aggregating ignored --keep_decoys flag
#36
jspaezp
closed
3 years ago
4
[0.7.2rc1] Updated tests, pandas code, and resolve oustanding issues
#35
wfondrie
closed
3 years ago
1
[Upgrade] Use pytest-datadir to manage data files for tests
#34
wfondrie
opened
3 years ago
2
Small test improvements
#33
wfondrie
closed
3 years ago
0
added keep_args cli argument
#32
jspaezp
closed
3 years ago
5
[Feature request] Add a "keep-decoys" argument to the main command line entry point
#31
jspaezp
closed
3 years ago
2
Add information about setting a random seed to the docs
#30
wfondrie
closed
3 years ago
0
More informative error when few proteins map
#29
jspaezp
closed
3 years ago
1
Add suppot for crosslinking mass spectrometry experiments
#28
wfondrie
closed
3 weeks ago
1
Modernize mokapot's build for PEP517
#27
wfondrie
closed
3 years ago
0
Final touches for v0.7.0 release
#26
wfondrie
closed
3 years ago
1
Add support for downstream quantitation tools
#25
wfondrie
closed
3 years ago
1
Check for debugging print statements
#21
wfondrie
closed
3 years ago
0
Fixed problem with parsing modifications from pepXML.
#20
wfondrie
closed
3 years ago
1
Support the parsing of PIN files with a "DefaultDirection" line.
#19
wfondrie
closed
3 years ago
0
ValueError: No decoy PSMs were detected.
#18
daishavdw
closed
3 years ago
10
Final updates for the 0.6.0 release
#17
wfondrie
closed
3 years ago
1
Added more FASTA tests
#16
wfondrie
closed
3 years ago
1
Fixed a bug with shared peptides and protein grouping.
#15
wfondrie
closed
3 years ago
1
Fasta parsing fails with missing entries
#14
wfondrie
closed
3 years ago
0
[BUG] Parsing FASTA files - IndexError: list index out of range
#13
tivdnbos
closed
3 years ago
6
Updates for PepXML support
#12
wfondrie
closed
3 years ago
1
Removed debugging print statements.
#11
wfondrie
closed
3 years ago
0
Added more PepXML tests
#10
wfondrie
closed
3 years ago
0
Updated PepXML parser for open modification search results
#9
wfondrie
closed
3 years ago
1
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