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## Description
`cellxgene_census.experimental.util._csr_iter.X_sparse_iter` has been found to be of great utility for both internal and external cases. Since it has not been advertised and it is ex…
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**Describe the bug**
Inconsistent use of CL Classification hierarchy to drive search (I'm assuming this is a bug, although I guess it could be a feature)
**To Reproduce**
Here's the CL hierarch…
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Blocked by #6 and #548.
Related to #89
Once `dataset_version_id` is included in the Census data, then the APIs `download_source_h5ad`/`get_source_h5ad_uri` must use ~the Discover API~ `GET` from …
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Hello, we've run into an issue that's similar to issue #59. However, while the listing of files updates automatically, if we upload a h5ad file to a directory, launch a cellxgene instance, then realiz…
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https://api.cellxgene.dev.single-cell.czi.technology/dp/v1/collections/94d7a586-5839-4335-82b6-4352d78f089e
The Portal API appears to be yielding 403 instead of 404 for nonexistent Collection uuids. …
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Steps to reproduce:
1. [Go here](https://cellxgene.cziscience.com/gene-expression?genes=CFAP54%2CRMST%2CSTK33%2CDNAH7%2CAR[…]CGLIS3%2CLRRIQ1%2CRFX3%2CSPATA17%2CTRMT9B%2CCFAP70&ver=2)
2. Expand "Brain"…
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HLCA data overlap is very complicated due to the prevalence of reused lung data in CELLxGENE. During submission, we erred on the side of caution and likely missed some unique data when annotating is_p…
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So, I was trying to perform some cell type annotation, without having any prior cell type labels (without fine-tuning the model). Based on the the idea here : https://github.com/bowang-lab/scGPT/issue…
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To reproduce:
- Go here: https://cellxgene.cziscience.com/gene-expression
- Search UBERON: in the cell type search bar.
- See all the UBERON: terms (e.g. UBERON:0002048 is lung).
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Currently all PR's on data-portal are failing with some error like:
```
> cellxgene-data-portal@0.1.0 prettier-check
> npx prettier --check .
glob error [Error: EACCES: permission denied, scandir '/r…
seve updated
10 months ago